PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G036300.1
Common NameB456_007G036300, LOC105801420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 90aa    MW: 9990.29 Da    PI: 5.0187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G036300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.8e-0815561455
                        HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        d++N  + +L++llP+ + + +++++s a +L + + YI+ Lq
  Gorai.007G036300.1 15 DELNALILRLQTLLPQlD-QSRHGRVSAAKVLNEICSYIRRLQ 56
                        679*************55.9**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.204155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-61556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-81571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-61559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSQRSTSSN KITDDELNAL ILRLQTLLPQ LDQSRHGRVS AAKVLNEICS YIRRLQNEVD  60
GLSGRLSQCL DSMDLTGFDA EIVRDLLQQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488176.16e-58PREDICTED: transcription factor PRE4-like
SwissprotF4JCN91e-20PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0D2SB656e-58A0A0D2SB65_G
STRINGGLYMA06G20520.14e-22(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-15bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]